How to use Intervene

Once you have installed Intervene, you can type:

intervene --help

This will show the main help, which list three subcommands/modules, including venn, upset, pairwise.

To view the help for the individual subcommands, please type:

To view venn module help, type this;

intervene venn --help

To view upset module help, type this;

intervene upset --help

To view pairwise module help, type this;

intervene pairwise --help

Run Intervene on test data

To run Intervene’s each module using example data use the following commands.

To run venn module with test data, type this;

intervene venn --test

To run upset module with test data, type this;

intervene upset --test

To run pairwise module with test data, type this;

intervene pairwise --test

These commands will save the results in the current working directory with a folder named Intervene_results. If you wish to save the results in a specific folder, you can type:

intervene <module_name> --test --output ~/path/to/your/results/folder