How to use Intervene¶
Once you have installed Intervene, you can type:
intervene --help
This will show the main help, which list three subcommands/modules, including venn
, upset
, pairwise
.
To view the help for the individual subcommands, please type:
To view venn
module help, type this;
intervene venn --help
To view upset
module help, type this;
intervene upset --help
To view pairwise
module help, type this;
intervene pairwise --help
Run Intervene on test data¶
To run Intervene’s each module using example data use the following commands.
To run venn
module with test data, type this;
intervene venn --test
To run upset
module with test data, type this;
intervene upset --test
To run pairwise
module with test data, type this;
intervene pairwise --test
These commands will save the results in the current working directory with a folder named Intervene_results
. If you wish to save the results in a specific folder, you can type:
intervene <module_name> --test --output ~/path/to/your/results/folder